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	<title>Comments on: Pipe Dreams</title>
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	<description>A blog about science, open-source and programming</description>
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		<title>By: Keith</title>
		<link>http://opennfo.wordpress.com/2007/10/07/pipe-dreams/#comment-38</link>
		<dc:creator>Keith</dc:creator>
		<pubDate>Mon, 08 Oct 2007 19:29:55 +0000</pubDate>
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		<description>Hi Celine,

Thank you for the feedback. I believe the error is on the side of the Yahoo Pipes framework rather than on the side of the journals. I have gone back and tested the pipe again and verified the that it is in fact able to fetch the PLOS article feed. The error message does still come up on occasion, but this is likely due to a problem on Yahoos end. 

If you would like to see the exact error message, you can click on &quot;view source,&quot; which requires first logging into into a Yahoo account. From there, highlight the PLOS feed box and hit &quot;refresh&quot; several times. About half of the time yahoo will successfully retrieve the rss feed, and the other times it will fail, outputting the error message mentioned above. I&#039;m not sure why this happens, but I believe it has something to do with the way Yahoo pipes is communicating with the PLOS servers. I will post a note on the yahoo Pipes forums and report the bug to them if it has not already been reported.

As for the Bio Med Central feed, Yahoo pipes has been consistently failing to fetch the feed contents. I believe this may be because they are apparently using a non-standard rss form for their article feed, or have a redirect somewhere that yahoo (and myself) are not catching. What is interesting however is that Google reader *is* able to fetch articles from BMC. In any case I will let them know, and check with the pipes forums.

Thanks for the help!
Take care,
Keith</description>
		<content:encoded><![CDATA[<p>Hi Celine,</p>
<p>Thank you for the feedback. I believe the error is on the side of the Yahoo Pipes framework rather than on the side of the journals. I have gone back and tested the pipe again and verified the that it is in fact able to fetch the PLOS article feed. The error message does still come up on occasion, but this is likely due to a problem on Yahoos end. </p>
<p>If you would like to see the exact error message, you can click on &#8220;view source,&#8221; which requires first logging into into a Yahoo account. From there, highlight the PLOS feed box and hit &#8220;refresh&#8221; several times. About half of the time yahoo will successfully retrieve the rss feed, and the other times it will fail, outputting the error message mentioned above. I&#8217;m not sure why this happens, but I believe it has something to do with the way Yahoo pipes is communicating with the PLOS servers. I will post a note on the yahoo Pipes forums and report the bug to them if it has not already been reported.</p>
<p>As for the Bio Med Central feed, Yahoo pipes has been consistently failing to fetch the feed contents. I believe this may be because they are apparently using a non-standard rss form for their article feed, or have a redirect somewhere that yahoo (and myself) are not catching. What is interesting however is that Google reader *is* able to fetch articles from BMC. In any case I will let them know, and check with the pipes forums.</p>
<p>Thanks for the help!<br />
Take care,<br />
Keith</p>
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		<title>By: Celine Nadeau</title>
		<link>http://opennfo.wordpress.com/2007/10/07/pipe-dreams/#comment-37</link>
		<dc:creator>Celine Nadeau</dc:creator>
		<pubDate>Mon, 08 Oct 2007 18:49:04 +0000</pubDate>
		<guid isPermaLink="false">http://opennfo.wordpress.com/2007/10/07/pipe-dreams/#comment-37</guid>
		<description>Dear Keith,

Thank you for your interest in PLoS Computational Biology, and for taking the time to share the &quot;kinks&quot; you have been experiencing with our RSS Feed. We sincerely appreciate all feedback, and constantly work to improve access to open-access research.

I am not too familiar with the Yahoo Pipe set-up, but I noticed that the error message you  mention returns an incorrect feed URL, which might explain the issue:
** Wrong Feed URL (as indicated in Yahoo Pipe Error Message):
http://pbiol.plosjournals.org/perlserv/?request=get-rss&amp;issn=1553-7358&amp;type=new-articles
** Correct Feed URL:
http://compbiol.plosjournals.org/perlserv/?request=get-rss&amp;issn=1553-7358&amp;type=new-articles

Additionally, when I tested &quot;Daily cup o&#039; Joe&quot; Pipes for the PLoS Computational biology feed with the text filter &quot;heat shock&quot;, it did fetch (3) relevant RSS results, and did not return an error message.

On a separate note, there seems to be a parsing error when trying to retrieve feeds from Bio Med Central:  &quot;could not parse feed from: http://www.biomedcentral.com/bmcbioinformatics/rss/&quot;

I hope this help resolve any issues you might be encountering, please do not hesitate to keep us posted on your progress!

Celine Nadeau
Web Producer - PLoS Journals
cnadeau [at] plos . org</description>
		<content:encoded><![CDATA[<p>Dear Keith,</p>
<p>Thank you for your interest in PLoS Computational Biology, and for taking the time to share the &#8220;kinks&#8221; you have been experiencing with our RSS Feed. We sincerely appreciate all feedback, and constantly work to improve access to open-access research.</p>
<p>I am not too familiar with the Yahoo Pipe set-up, but I noticed that the error message you  mention returns an incorrect feed URL, which might explain the issue:<br />
** Wrong Feed URL (as indicated in Yahoo Pipe Error Message):<br />
<a href="http://pbiol.plosjournals.org/perlserv/?request=get-rss&amp;issn=1553-7358&amp;type=new-articles" rel="nofollow">http://pbiol.plosjournals.org/perlserv/?request=get-rss&amp;issn=1553-7358&amp;type=new-articles</a><br />
** Correct Feed URL:<br />
<a href="http://compbiol.plosjournals.org/perlserv/?request=get-rss&amp;issn=1553-7358&amp;type=new-articles" rel="nofollow">http://compbiol.plosjournals.org/perlserv/?request=get-rss&amp;issn=1553-7358&amp;type=new-articles</a></p>
<p>Additionally, when I tested &#8220;Daily cup o&#8217; Joe&#8221; Pipes for the PLoS Computational biology feed with the text filter &#8220;heat shock&#8221;, it did fetch (3) relevant RSS results, and did not return an error message.</p>
<p>On a separate note, there seems to be a parsing error when trying to retrieve feeds from Bio Med Central:  &#8220;could not parse feed from: <a href="http://www.biomedcentral.com/bmcbioinformatics/rss/" rel="nofollow">http://www.biomedcentral.com/bmcbioinformatics/rss/</a>&#8221;</p>
<p>I hope this help resolve any issues you might be encountering, please do not hesitate to keep us posted on your progress!</p>
<p>Celine Nadeau<br />
Web Producer &#8211; PLoS Journals<br />
cnadeau [at] plos . org</p>
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